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Создан: 08.02.2011
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How do I cope with my pdf load?

Вторник, 08 Февраля 2011 г. 09:00 + в цитатник
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pdfAs promised I will explain how I am strugling to keep an overview of all the references I collect during my historical research about brain stimulation in psychiatry. Ideally, with a web application I should be able to do all the things I want. But none does exactly what I want. Web applications as Mendeley or Labmeeting are great for sharing your pdf with other people and tagging your pdfs. So lets start how I work.


*) I start using Endnote. I use the online search option in Endnote to find articles about for instance transcranial magnetic stimulation. The interesting ones I add to my Endnote library. I can use them later to create references in Word.


*) Next I export my references to a text file. This text file is imported in an Access database. I created this database especially for this research. I for instance want to know the last time I opened a pdf. I also want to store quotes from the original article together with the meta information.


research1


*) I use Adobe Pro to annnotate the pdfs. You can highlight or underline text with Abobe Pro.The underlined or highlighted text can then be copied into my Access database. I do not have to retype all the text.


*) Another thing that annoyed me was the many mouse clicks I needed to arrive at the pdf. First I click on the link in my database. Then at home I have to login to the library. Then the Pubmed page opens and I have to click the logo of the journal (if it is electronically available). After clicking that logo I have to click again on a different page and then finally I have my pdf. This takes at least 6 clicks. To overcome this I use Greasemonkey. This is an add-on for Firefox. This add-on uses javascript and can automate things. I created several scripts and now if a pdf is available it will open automatically if I click on a Pubmed link.


*) I store my information on an external harddisk to be able to work at different placadobe2es.


If you want more information about how I work or if you have ideas how I can improve my process please let me know in the comments.


Updated

An example of the Adobe Online Sharing Service.



Links:


Adobe Online Sharing Acrobat.com is a set of online services — file sharing and storage, PDF converter, online word processor, and web conferencing — you can use to create and share documents, communicate in real time, and simplify working with others. Its free, so sign up now.


Abobe Pro Pdf reader and manipulation tool


Endnote Reference management software


Greasemonkey Firefox add-on


Labmeeting Online sharing of pdfs


Mendeley Online sharing of pdfs



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How do I get and store all my electronic information?

Вторник, 08 Февраля 2011 г. 09:00 + в цитатник
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Yesterdayoverload I wrote about my pdf-overload and how I am coping with that. Today I will write about other sources information that I want to store or want to be alerted to.  I use:


*) Evernote to store extracts from webpages with the accompanying link. Before using Evernote I used Google Notebook.  But since there are rumours that Google stops supporting Notebook I switched to Evernote. I must say that I liked Notebook better. One of the reasons for that is that I also use Google Reader. I also would like to have the opportunity to work offline, but I did not yet find a solution for that. 


*) Google Reader to read my RSS-feeds. Not so long ago I had over a thousand RSS-feeds but I removed them all and started all over again. Nowadays I have approx. 25 feeds I read. I also created RSS-feeds for Pubmed for deep brain stimulation and transcranial magnetic stimulation.  Below you can find a video about creating a RSS-feed for a pubmed search term. 



*) Twitter to obtain information before it is even published on one of the weblogs. Since google reader does not yet(?) support some kind of alert if a new message arrives, Twitter gives me alert if something new is posted. But I am not yet a fervent Twitterer. 


*) I almost never use the favorites of my browser. Google Chrome automatically remembers the websites I visit the most. For other websites I just type the URL or I use google to find the url. 


*) I installed WordPress on my Asus EEEPC with linux. I also installed a webserver with mysql. This allows me to take notes during discussions in places where no (wireless) internet is available. These spots still exist in the Netherlands. 


As you can see I still use several software packages to store my information. Ideally, I want to store all the information in one place.



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Deep Brain Stimulation for OCD

Вторник, 08 Февраля 2011 г. 09:00 + в цитатник
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Belgian psychiatrist Damian Denys explains (in dutch) the use of DBS for OCD at Pauw en Witteman, a dutch talkshow. Below you can find an extensive video in which a patient treated for OCD is shown. Additional information should be found at Teleac in the course Wetenschap is beterschap, but unfortunatelly I could not find it.


The AMC, the medical centre Denys works,  also interviewed him for the video series Fascinaties (Fascination).



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Dr Shock’s selection of dutch medblogs

Вторник, 08 Февраля 2011 г. 09:00 + в цитатник
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landschapUnfortunatelly we (Dr Shock and I) were not able to get a lot of input from other medbloggers for our grand rounds. Of course there were exceptions such as Laika. As a result of this Dr Shock started his monthly rounds of dutch medblogs.


The Dutch grand round had a short live. Nevertheless some medbloggers in The Netherlands produce interesting posts. Had lost track of most of them. Decided to produce a monthly selection as a kind of grand round. Choices are very biased and made by myself. If you feel left out, unappreciated or anything else please contact me [dr Shock].


I started my own weekly grand rounds (in dutch) in 2007, but it took me too much time to continue.



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Greasemonkey scripts for pubmed

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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greasemonkeyDr Shock asked for this.  I use five Greasemonkey scripts.


*) Pubmed redirect. First of all I redirect all pubmed pages (ncbi.nlm.nih.gov) to the pubmed page (ncbi.nlm.nih.gov.proxy.library.uu.nl) of my university

*) Automatically open UBU link. If the pubmed page consists of a direct (UBU) link this script automatically opens the link to the pages of for instance a journal.

*) Resize window. For some reason I do not know a library page opens in a small windows. This scripts makes sure that the window resizes to the full screen.

*) Automatically open PDF.  If the pubmed page consists of links to pdfs then this script automatically opens the pdf.

*) Redirect Springerlink. This is a redirect script for Springer pages.


You can find the scripts below. Any questions? Let me know.


 Pubmed redirect 


// ==UserScript==

// @name           Redirect Pubmed

// @namespace      Redirect Pubmed

// @description    Redirect Pubmed

// @include        http://*ncbi.nlm.nih.gov*/*

// ==/UserScript==


//alert(document.location.href);

var str =  document.location.href; // get the hyperlink of the current page and store it in the variable str

var matchpos = str.search(/proxy.library.uu.nl/); // see if proxy.library.uu.nl occurs in the variable str 

var rep =   ncbi.nlm.nih.gov.proxy.library.uu.nl;  // store new hyperlink in variable rep

if (matchpos ==-1){ // if str does not contain proxy.library.uu.nl then substitute links

str = str.replace(/ncbi.nlm.nih.gov/g, rep); // substitute ncbi.nlm.nih.gov with variable rep

document.location.href= str;

}





 Automatically open UBU Link -

// ==UserScript==

// @name           Automatically open UBU Link

// @namespace      NLM.NIH.GOV.PROXY.LIBRARY.UU.NL

// @include        http://*ncbi.nlm.nih.gov.proxy.library.uu.nl*

// ==/UserScript==


// an UBU link is characterized by one of the following links: sfx.library.uu.nl, pubmedcentral.nih.gov/articlerender or ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId


 


var links = document.getElementsByTagName(a); // get all hyperlinks and store them in variable links

for(var i = 0; i < links.length; i++) { // loop through the hyperlinks in variable links


var url = links[i].href; // store array variable in url

var matchpos = url.search(/sfx.library.uu.nl/) // see if sfx.library.uu.nl occurs in the variable url

if (matchpos !=-1){ // if url contains sfx.library.uu.nl open url in new tab

GM_openInTab(url);


}

var matchpos1 = url.search(/pubmedcentral.nih.gov\/articlerender/); // see if pubmedcentral.nih.gov/articlerender occurs in the variable url

if (matchpos1 !=-1){ // if url contains pubmedcentral.nih.gov/articlerender open url in new tab

document.location = url;


}

var matchpos2 = url.search(/ncbi.nlm.nih.gov.proxy.library.uu.nl\/entrez\/utils\/fref.fcgi\?PrId/); // see if ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId occurs in the variable url

if (matchpos2 !=-1){ // if url contains ncbi.nlm.nih.gov.proxy.library.uu.nl/entrez/utils/fref.fcgi?PrId open url in new tab

GM_openInTab(url);


}


}




 Resize window  -


// ==UserScript==

// @name           Library

// @namespace      Sfx.library.uu.nl

// @include        http://sfx.library.uu.nl.proxy.library.uu.nl*

// ==/UserScript==


self.resizeTo(screen.availWidth,screen.availHeight);





Automatically open PDF -


// ==UserScript==

// @name           Automatically open PDF

// @namespace      Pubmedcentral

// @include        http://www.pubmedcentral.nih.gov.proxy.library.uu.nl/articlerender.fcgi?tool=pubmed&pubmedid=*

// ==/UserScript==


// if a hyperlink on a http://www.pubmedcentral.nih.gov.proxy.library.uu....ool=pubmed&pubmedid=* page contains blobtype=pdf then it refers to a pdf. So this scripts looks for such hyperlinks and opens them if it occurs.


var found = 0;

var links = document.getElementsByTagName(a); // get all hyperlinks and store them in variable links

for(var i = 0; i < links.length; i++) { // loop through the hyperlinks in variable links


var url = links[i].href;

var matchpos = url.search(/blobtype\=pdf/);  // see if blobtype=pdf occurs in the variable url


if (matchpos !=-1 && found==0){  // if url contains blobtype=pdf open url in new window

window.location = url;

//alert(url);

found = 1; // to prevent opening more than one window the variable found is set to 1


}


}





Redirect Springerlink 


// ==UserScript==

// @name           Redirect Springerlink

// @namespace      Pubmedcentral

// @include        http://www.springerlink.com/*

// ==/UserScript==


var str =  document.location.href;

var matchpos = str.search(/proxy.library.uu.nl/);

var rep =   www.springerlink.com.proxy.library.uu.nl;

if (matchpos ==-1){

str = str.replace(/www.springerlink.com/g, rep);

document.location.href= str;

}






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Electrical stimulation of the face

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Would you do this to your friends?



Off-topic: google has added Street View for the Netherlands. For now only 010 and 020.



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Now twitter should work

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Related Articles at MedBlog.nl:Test Twitter|| Twitter Updates for 2009-03-04|| Twitter Updates for 2009-03-11|| Twitter Updates for 2009-03-23|| Twitter Updates for 2009-03-10||


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Open Source rTMS stimulator

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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rtmsDo you want an easy adaptable transcranial magnetic stimulator? It might be possible in the (near) future. At OpenStim you can read about an open source rTMS stimulator. The WIKI has two goals:


1. Create a community that designs the core technology for a safe, highly functional, inexpensive, efficacious noninvasive transcranial magnetic stimulator (TMS) device for stimulating the central nervous system.


2. Facilitate experimentation and exchange of ideas, on the topic of modulation of brain function in a variety of people and contexts, so that we can learn more about the neural circuits mediating our subjective experiences, and improve mental functions (aka hacking your brain).


Another question that came to my mind about (r)TMS was whether you need to be a physician (MD) in the Netherlands to apply (r)TMS.  You need to be a physician to apply electroconvulsive therapy (dutch). But does (r)TMS belong to that category? And how about Magnetic Seizure Therapy?



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Twitter Updates for 2009-03-04

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Powered by Twitter Tools.



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Test Twitter

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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My Twitter now should automatically update whenever I publish a new post.



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Twitter Updates for 2009-03-10

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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  • Ill be at Zorg&ICT http://tinyurl.com/abf5et on Thurday March, 19th. You can find me the site of De Heer Software. Who is also there? #


Powered by Twitter Tools.



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Help needed on d’Arsonval’s publications

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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arsonvalFor my thesis on TMS I am looking for a list of  publications of the french scientist dArsonval. The most famous publication on TMS by dArsonval in 18961 I already have in my possession. If someone has a list, please send me an e-mail or leave the list in the comment. Or if someone has an easy way to obtain the list, let me know!


1) dArsonval, J. A. (1896). Dispotifs pour la mesure des courants alternatifs de toutes fr


Twitter Updates for 2009-03-11

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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  • As a test I developed a Twitter account http://tinyurl.com/bsjexa for ambulance calls. It does not update regularly but in the future maybe #


Powered by Twitter Tools.



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Looking for online resources

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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For my thesis I am looking for available online resources from the period around 1900. Does someone have an extensive overview of available newspapers. I for instance found Austrian newspapers online.  Now I am looking for an ad in the Neuer Z


Magnetotherapy around 1900

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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elektromagnetische-apparatenDr Shock speculates that I am busy with Twitter. But that is not the case. I am busy with my historical research on electrotherapy with a focus on magnetic stimulation and psychiatry. Now I am working on the period around 1900.  I found a lot of documents about German magnetotherapy. An electrotechnical engineer Eugen Konrad M


New Cool Gadget

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Acutezorg wonders what health people would be able to do with it. One thing that would be cool is to project peoples organs on the outside of their body. I do not yet know what good will come out of that, but it would be fun.



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Twitter Updates for 2009-03-23

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Powered by Twitter Tools.



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Adam Savage (mythbusters) about his obsessions

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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I am a big fan of Mythbusters. So I was pleasantly surprised to read that Adam Savage talked about his obsessions at Ted  He is as energetic as in the television show. A must see.




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Брокколи влияет на генетику, защищая от рака

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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Британские ученые установили, что немного брокколи на обед может уберечь мужчин от рака предстательной железы.

Исследователи обнаружили, что брокколи содержит химическую группу, которая провоцирует сотни генетических изменений, активизируя, в частности, гены, отвечающие за борьбу с раком, и одновременно парализует гены, способствующие развитию злокачественных процессов.


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Medblog.nl te koop / for sale

Вторник, 08 Февраля 2011 г. 08:59 + в цитатник
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De domeinnaam Medblog.nl is te koop. De pagerank van deze domeinnaam is 5. Neem contact op als u interesse heeft.


Medblog.nl is for sale. Make an offer if you are interested. The current pagerank is 5.



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Поиск сообщений в cereber
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